AAGAA GAGAAGAGGG GACAGGAGGG R AGGGGAGGGG AGGGGAGGAG AGGGG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10SnJ |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZO/HlLtJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RIIIS/J |
SJL/J |
SPRET/EiJ |
SWR/J |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss916980020 | MGP_WTSI_4_108326576 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10SnJ |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZO/HlLtJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RIIIS/J |
SJL/J |
SPRET/EiJ |
SWR/J |
||||
rs584310834 | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss916980020 | MGP_WTSI_4_108326576 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr4:108183773 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Coa7 | cytochrome c oxidase assembly factor 7 | 1576 bp upstream | ||||||
Cpgi14556 | CpG island 14556 | 1436 bp proximal | ||||||
Rr367666 | regulatory region 367666 | 1327 bp upstream | ||||||
Rr398380 | regulatory region 398380 | 471 bp upstream | ||||||
Rr597153 | regulatory region 597153 | 584 bp proximal | ||||||
Rr597154 | regulatory region 597154 | 1074 bp proximal | ||||||
Tssr38289 | transcription start site region 38289 | 1560 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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