rs584266663 SNP Detail

Summary

• ID
  rs584266663
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:112640579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGC TGGCCGGATC TGGGCCGCCG
  S
  GGTGCCGGCC ACAGGACGCT GCTCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss921570629	MGP_WTSI_12_112674145	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs584266663					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921570629	MGP_WTSI_12_112674145	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112640579 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Akt1	Akt serine/threonine kinase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Gm30150	predicted gene, 30150			343 bp upstream
Rr369631	regulatory region 369631			1285 bp upstream
Rr473552	regulatory region 473552			1216 bp distal
Rr473553	regulatory region 473553			within coordinates
Rr473554	regulatory region 473554			121 bp proximal
Rr473555	regulatory region 473555			234 bp proximal
Rr473556	regulatory region 473556			277 bp proximal
Rr473557	regulatory region 473557			837 bp proximal
Rr473558	regulatory region 473558			1302 bp proximal
Rr473559	regulatory region 473559			1493 bp proximal
Rr473560	regulatory region 473560			1739 bp proximal
Tssr115391	transcription start site region 115391			267 bp upstream
Tssr117877	transcription start site region 117877			118 bp upstream
Tssr117878	transcription start site region 117878			59 bp upstream
Tssr117879	transcription start site region 117879			48 bp downstream
Tssr117880	transcription start site region 117880			198 bp downstream
Tssr117881	transcription start site region 117881			229 bp downstream
Tssr117882	transcription start site region 117882			608 bp downstream
Tssr117883	transcription start site region 117883			629 bp downstream
Tssr117884	transcription start site region 117884			681 bp downstream