rs584235792 SNP Detail

Summary

• ID
  rs584235792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117148914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA ATTACAAGAC CCGGATGGCA
  Y
  GGGGGGGGGG GGGGTTCAGT TTTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss918312417	MGP_WTSI_6_117171953	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs584235792					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918312417	MGP_WTSI_6_117171953	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117148914 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637287	regulatory region 637287	1330 bp distal
Rr637288	regulatory region 637288	478 bp proximal
Rr637289	regulatory region 637289	1913 bp proximal
Tssr58391	transcription start site region 58391	1948 bp downstream
Tssr58392	transcription start site region 58392	466 bp downstream
Tssr58393	transcription start site region 58393	447 bp downstream
Tssr58394	transcription start site region 58394	407 bp downstream
Tssr58395	transcription start site region 58395	1539 bp upstream
Tssr58396	transcription start site region 58396	1555 bp upstream
Tssr58397	transcription start site region 58397	1593 bp upstream
Tssr58398	transcription start site region 58398	1619 bp upstream
Tssr58399	transcription start site region 58399	1641 bp upstream
Tssr58400	transcription start site region 58400	1669 bp upstream
Tssr58401	transcription start site region 58401	1705 bp upstream
Tssr58402	transcription start site region 58402	1736 bp upstream
Tssr58403	transcription start site region 58403	1754 bp upstream
Tssr58404	transcription start site region 58404	1773 bp upstream
Tssr58405	transcription start site region 58405	1815 bp upstream
Tssr58406	transcription start site region 58406	1845 bp upstream
Tssr58407	transcription start site region 58407	1876 bp upstream
Tssr58408	transcription start site region 58408	1943 bp upstream
Tssr58409	transcription start site region 58409	1965 bp upstream
Tssr58410	transcription start site region 58410	1987 bp upstream
Tssr62617	transcription start site region 62617	1603 bp downstream
Tssr62618	transcription start site region 62618	1625 bp downstream
Tssr62619	transcription start site region 62619	1661 bp downstream
Tssr62620	transcription start site region 62620	1704 bp downstream
Tssr62621	transcription start site region 62621	1770 bp downstream