rs584140038 SNP Detail

Summary

• ID
  rs584140038
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148218237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT GTCTCTCTGT CTCTGTCTCT
  S
  TCTCTCTGTC TCTGTCTCTG TCTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	FVB/NJ	LG/J	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	SPRET/EiJ	WSB/EiJ
ss915742759	MGP_WTSI_2_148376317	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	C	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	C	C	C	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	FVB/NJ	LG/J	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	SPRET/EiJ	WSB/EiJ
rs584140038					SNP	G	G	G	C	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	C	C	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915742759	MGP_WTSI_2_148376317	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148218237 () rs orientation: forward

Symbol	Name	Function Class
Gm39957	predicted gene, 39957	13 bp downstream
Rr566887	regulatory region 566887	210 bp distal
Rr566888	regulatory region 566888	786 bp distal
Rr566889	regulatory region 566889	405 bp distal