rs584123680 SNP Detail

Summary

• ID
  rs584123680
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135674856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACA AAAAAAAAAA AAAACAAAAA
  M
  AAAAAAAATG GGAAAGAAAA AGAAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57L/J	C58/J	CE/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	QSi5/Ianm	RF/J	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss917096788	MGP_WTSI_4_135947545	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	A	C	C	C	C	C	A	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57L/J	C58/J	CE/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	QSi5/Ianm	RF/J	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs584123680					SNP	C	C	C	C	C	C	C	A	C	C	C	C	C	A	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917096788	MGP_WTSI_4_135947545	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135674856 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15085	CpG island 15085			253 bp distal
Gm69275	predicted gene, 69275			1168 bp upstream
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase			Intron
				Noncoding-Transcript-Variant
Rr602211	regulatory region 602211			1179 bp distal
Rr602212	regulatory region 602212			1087 bp distal
Rr602213	regulatory region 602213			110 bp distal
Rr602214	regulatory region 602214			694 bp proximal
Rr602215	regulatory region 602215			1251 bp proximal
Tssr39660	transcription start site region 39660			1050 bp downstream
Tssr39661	transcription start site region 39661			871 bp upstream
Tssr44007	transcription start site region 44007			1163 bp upstream