rs583888817 SNP Detail

Summary

• ID
  rs583888817
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148049339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCC TTTCCTTTCC TTTTCCTCTC
  T
  TCTCCTCTCC TCTCCTCTCC TCTCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	RIIIS/J
ss917139982	MGP_WTSI_4_147964882	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	RIIIS/J
rs583888817					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917139982	MGP_WTSI_4_147964882	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148049339 () rs orientation: forward

Symbol	Name	Function Class
Gm69767	predicted gene, 69767	1183 bp upstream
Rr407044	regulatory region 407044	605 bp distal
Rr407312	regulatory region 407312	932 bp distal
Rr604537	regulatory region 604537	1591 bp distal
Rr604538	regulatory region 604538	1194 bp distal
Rr604539	regulatory region 604539	693 bp distal
Rr604540	regulatory region 604540	786 bp proximal