rs583883835 SNP Detail

Summary

• ID
  rs583883835
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88769093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCA TGTATGTATG TATGCTTGTA
  Y
  GTATTTATTT ATTTATTTAT TTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	SEA/GnJ	SM/J	ST/bJ	WSB/EiJ
ss916912231	MGP_WTSI_4_88850856	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	C	C	C	C	C	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	T	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	SEA/GnJ	SM/J	ST/bJ	WSB/EiJ
rs583883835					SNP	C	T	T	C	C	C	C	C	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916912231	MGP_WTSI_4_88850856	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88769093 () rs orientation: forward

Symbol	Name	Function Class
Ifna	interferon alpha complex region	within coordinates
Ifna1	interferon alpha 1	200 bp downstream
Rr595123	regulatory region 595123	347 bp proximal