rs583863875 SNP Detail

Summary

• ID
  rs583863875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107223773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCA GCACCTGCCT AGCACCTGCC
  Y
  AGCACCTGCC CAGCACCTGC CTAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	SM/J	ST/bJ	SWR/J
ss916977071	MGP_WTSI_4_107366576	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	SM/J	ST/bJ	SWR/J
rs583863875					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916977071	MGP_WTSI_4_107366576	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107223773 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14540	CpG island 14540	1021 bp proximal
Ndc1	NDC1 transmembrane nucleoporin	1471 bp upstream
Rr367664	regulatory region 367664	1011 bp upstream
Rr596979	regulatory region 596979	723 bp proximal
Rr596980	regulatory region 596980	792 bp proximal
Rr596981	regulatory region 596981	1219 bp proximal
Rr596982	regulatory region 596982	1264 bp proximal
Rr596983	regulatory region 596983	1708 bp proximal
Tssr38245	transcription start site region 38245	1153 bp upstream
Tssr38246	transcription start site region 38246	1181 bp upstream
Tssr38247	transcription start site region 38247	1428 bp upstream
Tssr38248	transcription start site region 38248	1463 bp upstream
Tssr38249	transcription start site region 38249	1485 bp upstream
Tssr38250	transcription start site region 38250	1499 bp upstream
Tssr38251	transcription start site region 38251	1745 bp upstream