rs583731933 SNP Detail

Summary

• ID
  rs583731933
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137572178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCA CACATCCACA AATCGCTGAT
  Y
  GGGAAGAAAG GACAACAGAA GACTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss916465594	MGP_WTSI_3_137866417	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs583731933					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916465594	MGP_WTSI_3_137866417	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137572178 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13866	CpG island 13866			589 bp distal
Cpgi13867	CpG island 13867			934 bp proximal
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14			623 bp upstream
H2az1	H2A.Z variant histone 1			Coding-Synonymous
				mRNA-UTR
Rr367565	regulatory region 367565			1910 bp downstream
Rr398061	regulatory region 398061			412 bp downstream
Rr585998	regulatory region 585998			1920 bp distal
Rr586000	regulatory region 586000			1794 bp distal
Rr586001	regulatory region 586001			1823 bp distal
Rr586002	regulatory region 586002			1683 bp distal
Rr586003	regulatory region 586003			1182 bp distal
Rr586004	regulatory region 586004			645 bp distal
Rr586005	regulatory region 586005			47 bp distal
Rr586006	regulatory region 586006			768 bp proximal
Rr586007	regulatory region 586007			1338 bp proximal
Tssr31912	transcription start site region 31912			1892 bp downstream
Tssr31913	transcription start site region 31913			1853 bp downstream
Tssr31914	transcription start site region 31914			1826 bp downstream
Tssr31915	transcription start site region 31915			1296 bp downstream
Tssr31916	transcription start site region 31916			546 bp downstream
Tssr31917	transcription start site region 31917			479 bp downstream
Tssr31918	transcription start site region 31918			1341 bp upstream
Tssr31919	transcription start site region 31919			1390 bp upstream
Tssr31920	transcription start site region 31920			1442 bp upstream
Tssr31921	transcription start site region 31921			1461 bp upstream
Tssr31922	transcription start site region 31922			1541 bp upstream
Tssr31923	transcription start site region 31923			1645 bp upstream
Tssr31924	transcription start site region 31924			1660 bp upstream
Tssr31925	transcription start site region 31925			1704 bp upstream