rs583647562 SNP Detail

Summary

• ID
  rs583647562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:160470137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA AAAAAAAAAA GGAGTGGGGG
  Y
  GGGGGGGGGG AGGAGCAGAT GAGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	QSi5/Ianm	RIIIS/J	SWR/J
ss915787164	MGP_WTSI_2_160628217	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	QSi5/Ianm	RIIIS/J	SWR/J
rs583647562					SNP	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915787164	MGP_WTSI_2_160628217	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160470137 () rs orientation: forward

Symbol	Name	Function Class
Rr569035	regulatory region 569035	116 bp distal
Rr569036	regulatory region 569036	602 bp distal
Rr569037	regulatory region 569037	530 bp distal
Rr569038	regulatory region 569038	1055 bp proximal