rs583613174 SNP Detail

Summary

• ID
  rs583613174
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:94262032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCA CTCCCACCCC CACCCCCACC
  C
  CCTCCTCCAC CCCCACCCCC ACCCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	DBA/2J	LP/J	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
ss918225358	MGP_WTSI_6_94285051	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	DBA/2J	LP/J	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
rs583613174					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918225358	MGP_WTSI_6_94285051	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94262032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17759	CpG island 17759	226 bp distal
Gm31661	predicted gene, 31661	within coordinates
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	1134 bp upstream
Rr634856	regulatory region 634856	1239 bp distal
Rr634857	regulatory region 634857	1021 bp distal
Rr634858	regulatory region 634858	474 bp distal
Rr634859	regulatory region 634859	9 bp distal
Rr634860	regulatory region 634860	1603 bp proximal
Tssr62172	transcription start site region 62172	1510 bp upstream
Tssr62173	transcription start site region 62173	1449 bp upstream
Tssr62174	transcription start site region 62174	1260 bp upstream
Tssr62175	transcription start site region 62175	1231 bp upstream
Tssr62176	transcription start site region 62176	1205 bp upstream
Tssr62177	transcription start site region 62177	1115 bp upstream