rs583483859 SNP Detail

Summary

• ID
  rs583483859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154501939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACA CACACCACAC ACCACACACA
  Y
  ACACACACAC ACCACACACA CCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	RF/J	RIIIS/J	SM/J	ST/bJ	SWR/J
ss917164244	MGP_WTSI_4_154417482	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	RF/J	RIIIS/J	SM/J	ST/bJ	SWR/J
rs583483859					SNP	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917164244	MGP_WTSI_4_154417482	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154501939 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D4Mit209	DNA segment, Chr 4, Massachusetts Institute of Technology 209			1852 bp distal
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Rr606159	regulatory region 606159			1517 bp distal
Rr606160	regulatory region 606160			458 bp distal
Rr606161	regulatory region 606161			514 bp distal
Rr606162	regulatory region 606162			32 bp proximal
Rr606163	regulatory region 606163			1640 bp proximal
Rr606164	regulatory region 606164			1790 bp proximal