rs583425953 SNP Detail

Summary

• ID
  rs583425953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:21568512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA CTGGGGAGGT TCTCCTGGGC
  R
  GGGGTGGGGG GGGGTGGGAG GTAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss923864157	MGP_WTSI_18_21435455	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs583425953					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923864157	MGP_WTSI_18_21435455	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:21568512 () rs orientation: forward

Symbol	Name	Function Class
D18Mit68	DNA segment, Chr 18, Massachusetts Institute of Technology 68	170 bp proximal
Rr393394	regulatory region 393394	184 bp downstream
Rr534684	regulatory region 534684	1643 bp proximal