rs583319609 SNP Detail

Summary

• ID
  rs583319609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118947035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC CTCCCTCCCT CCCTCCCTCC
  Y
  TCCCTCCCTC CCTCCCTCCC TCCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	NON/ShiLtJ	QSi3/Ianm	RIIIS/J	SJL/J	SWR/J
ss918319756	MGP_WTSI_6_118970074	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	NON/ShiLtJ	QSi3/Ianm	RIIIS/J	SJL/J	SWR/J
rs583319609					SNP	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918319756	MGP_WTSI_6_118970074	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118947035 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637559	regulatory region 637559			1748 bp proximal
Tssr62670	transcription start site region 62670			1927 bp upstream
Tssr62671	transcription start site region 62671			1714 bp upstream