rs583277168 SNP Detail

Summary

• ID
  rs583277168
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69417159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGA AGGGAAGAGG GAGGGAGGGA
  G
  GGAGGGAGGG AGGGAGGGAG GGAGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	FVB/NJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
ss915476980	MGP_WTSI_2_69586815	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	FVB/NJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
rs583277168					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915476980	MGP_WTSI_2_69586815	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69417159 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11710	CpG island 11710	309 bp distal
Cpgi11711	CpG island 11711	1155 bp proximal
Lrp2	low density lipoprotein receptor-related protein 2	786 bp upstream
Rr558427	regulatory region 558427	797 bp distal
Rr558428	regulatory region 558428	260 bp distal
Rr558429	regulatory region 558429	264 bp proximal
Rr558430	regulatory region 558430	741 bp proximal
Tssr24442	transcription start site region 24442	778 bp upstream