rs583245684 SNP Detail

Summary

• ID
  rs583245684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:35674689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG AGGGAGAAGG AGGAGGAGGA
  R
  GGAGAAGGGA GAAGGGAGAA GGAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
ss919230969	MGP_WTSI_8_35207535	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
rs583245684					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919230969	MGP_WTSI_8_35207535	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:35674689 () rs orientation: forward

Symbol	Name	Function Class
Gm56851	predicted gene, 56851	within coordinates
Rr368522	regulatory region 368522	1397 bp downstream
Rr662133	regulatory region 662133	1827 bp distal
Rr662134	regulatory region 662134	988 bp distal
Rr662135	regulatory region 662135	1678 bp distal
Rr662136	regulatory region 662136	737 bp distal
Rr662137	regulatory region 662137	742 bp proximal
Tssr2546	transcription start site region 2546	1585 bp downstream
Tssr76890	transcription start site region 76890	993 bp downstream
Tssr76891	transcription start site region 76891	1236 bp upstream
Tssr80930	transcription start site region 80930	909 bp downstream