rs583074008 SNP Detail

Summary

• ID
  rs583074008
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129086293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT GGGCACCAAA AAAAAAAAAA
  R
  AAAAAAAGAA AAAAAAAAAC CTCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	PL/J	PWK/PhJ	RF/J
ss915685985	MGP_WTSI_2_129244373	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	PL/J	PWK/PhJ	RF/J
rs583074008					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915685985	MGP_WTSI_2_129244373	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129086293 () rs orientation: forward

Symbol	Name	Function Class
Rr373844	regulatory region 373844	1320 bp downstream
Rr373845	regulatory region 373845	1569 bp upstream
Rr564888	regulatory region 564888	1522 bp distal
Rr564889	regulatory region 564889	777 bp distal
Rr564890	regulatory region 564890	157 bp distal
Rr564891	regulatory region 564891	265 bp proximal
Rr564892	regulatory region 564892	280 bp proximal
Rr564893	regulatory region 564893	1136 bp proximal
Tssr20109	transcription start site region 20109	1984 bp upstream