rs582801404 SNP Detail

Summary

• ID
  rs582801404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117733670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTT GTTGTCACTA TTGTTGTTTG
  Y
  TTTTAAGACT CTCACACTGT AATCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	QSi5/Ianm	RIIIS/J	SWR/J
ss918314984	MGP_WTSI_6_117756709	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	QSi5/Ianm	RIIIS/J	SWR/J
rs582801404					SNP	T	T	T	T	T	T	T	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918314984	MGP_WTSI_6_117756709	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117733670 () rs orientation: forward

Symbol	Name	Function Class
Rr637359	regulatory region 637359	1900 bp proximal
Rr637360	regulatory region 637360	1982 bp proximal