rs582794463 SNP Detail

Summary

• ID
  rs582794463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89256522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT GTGTCTGTGT GTATGTCTCT
  R
  TATGTGTCTC TGTGTGTGTG TCTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CZECHII/EiJ	I/LnJ	LEWES/EiJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	ST/bJ
ss918210404	MGP_WTSI_6_89279540	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CZECHII/EiJ	I/LnJ	LEWES/EiJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	ST/bJ
rs582794463					SNP	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918210404	MGP_WTSI_6_89279540	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89256522 () rs orientation: forward

Symbol	Name	Function Class
4930512J16Rik	RIKEN cDNA 4930512J16 gene	within coordinates
Rr634089	regulatory region 634089	912 bp proximal
Rr634090	regulatory region 634090	1976 bp proximal