rs582678120 SNP Detail

Summary

• ID
  rs582678120
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116645052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG AAGAGAAGAG AAGAGAAGAG
  G
  AGGGGAGGGG AGGGGAGGGG AGGGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C58/J	CE/J	DBA/1J	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SM/J	SPRET/EiJ
ss918310547	MGP_WTSI_6_116668091	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C58/J	CE/J	DBA/1J	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SM/J	SPRET/EiJ
rs582678120					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918310547	MGP_WTSI_6_116668091	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116645052 () rs orientation: forward

Symbol	Name	Function Class
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637228	regulatory region 637228	500 bp proximal
Rr637229	regulatory region 637229	1071 bp proximal
Rr637230	regulatory region 637230	1893 bp proximal
Tssr58382	transcription start site region 58382	1730 bp downstream
Tssr58383	transcription start site region 58383	1294 bp upstream
Tssr58384	transcription start site region 58384	1332 bp upstream
Tssr62604	transcription start site region 62604	276 bp downstream
Tssr62605	transcription start site region 62605	310 bp downstream