rs582673240 SNP Detail

Summary

• ID
  rs582673240
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:146823412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATT ATATCTTTAG ATATGTGGTT
  Y
  TCAACCTCCC TAATTTTGCA ATACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57L/J	FVB/NJ	JF1/MsJ	LP/J	MOLF/EiJ	NZO/HlLtJ	QSi5/Ianm	SPRET/EiJ
ss917135645	MGP_WTSI_4_146738955	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57L/J	FVB/NJ	JF1/MsJ	LP/J	MOLF/EiJ	NZO/HlLtJ	QSi5/Ianm	SPRET/EiJ
rs582673240					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917135645	MGP_WTSI_4_146738955	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:146823412 () rs orientation: forward

Symbol	Name	Function Class
Rr604449	regulatory region 604449	1078 bp distal
Rr604450	regulatory region 604450	1883 bp proximal