rs582636126 SNP Detail

Summary

• ID
  rs582636126
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116529723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCA TCCATCCATC CATCCATCCA
  C
  CCATCCATCC ATCCATCCAT CCACC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CAST/EiJ	KK/HlJ	SPRET/EiJ
ss916382279	MGP_WTSI_3_116736074	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CAST/EiJ	KK/HlJ	SPRET/EiJ
rs582636126					SNP	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916382279	MGP_WTSI_3_116736074	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116529723 () rs orientation: forward

Symbol	Name	Function Class
Gm54181	predicted gene, 54181	Intron
Gm64822	predicted gene, 64822	within coordinates
Rr375627	regulatory region 375627	1537 bp downstream
Rr583772	regulatory region 583772	1309 bp proximal
Rr583773	regulatory region 583773	1386 bp proximal
Rr583774	regulatory region 583774	1411 bp proximal