GTATA CTAGAGAACC ACAGTAACAA W GTAGCTCAGT GCTGCTAGAA CCACA W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
DBA/1J |
FVB/NJ |
I/LnJ |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
QSi3/Ianm |
RIIIS/J |
SJL/J |
SM/J |
ST/bJ |
SWR/J |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss916490929 | MGP_WTSI_3_144803884 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | A | A | A | A | A | A | A | A | A | A | T | T | T | A | A | A | A | A | A | A | A | A | A | A | A | T | A | T | A |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||
SNP | Consensus Type | A/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
DBA/1J |
FVB/NJ |
I/LnJ |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
QSi3/Ianm |
RIIIS/J |
SJL/J |
SM/J |
ST/bJ |
SWR/J |
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rs582494028 | SNP | A | A | A | A | A | A | A | A | A | A | T | T | T | A | A | A | A | A | A | A | A | A | A | A | A | T | A | T | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss916490929 | MGP_WTSI_3_144803884 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/T |
Location: Chr3:144509645 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Clca3a2 | chloride channel accessory 3A2 | Intron | ||||||
Rr586738 | regulatory region 586738 | 1713 bp distal | ||||||
Rr586739 | regulatory region 586739 | 1808 bp distal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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