rs582412002 SNP Detail

Summary

• ID
  rs582412002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:155236968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTA TCTATCTATC TATCTATCTA
  Y
  CTACCTACCT ATCTATCTAT CTATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi3/Ianm	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss916530889	MGP_WTSI_3_155531331	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	T	C	T	C	C	T	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi3/Ianm	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs582412002					SNP	C	C	C	C	C	C	C	C	T	C	T	C	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916530889	MGP_WTSI_3_155531331	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:155236968 () rs orientation: forward

Symbol	Name	Function Class
Gm33266	predicted gene, 33266	1133 bp upstream
Rr375954	regulatory region 375954	151 bp upstream
Rr587935	regulatory region 587935	301 bp distal