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rs582309345 SNP Detail
Summary
  • ID
    rs582309345
  • Variation Type
    SNP
  • Alleles
    A/C/G
Genome Location and Flanking Sequence
  • Location
    Chr4:108183766 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          AAAGG ATAAGAAGAG AAGAGGGGAC
    V
    GGAGGGGAGG GGAGGGGAGG GGAGG                                      
    
    V = A/C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BTBR T<+> Itpr3/J
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RIIIS/J
SJL/J
SM/J
SPRET/EiJ
SWR/J
ss916980019 MGP_WTSI_4_108326569 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A C A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BTBR T<+> Itpr3/J
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RIIIS/J
SJL/J
SM/J
SPRET/EiJ
SWR/J
rs582309345 SNP A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A C A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss916980019 MGP_WTSI_4_108326569 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:108183766 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Coa7 cytochrome c oxidase assembly factor 7 1583 bp upstream
Cpgi14556 CpG island 14556 1443 bp proximal
Rr367666 regulatory region 367666 1334 bp upstream
Rr398380 regulatory region 398380 478 bp upstream
Rr597153 regulatory region 597153 591 bp proximal
Rr597154 regulatory region 597154 1081 bp proximal
Tssr38289 transcription start site region 38289 1567 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory