rs581820822 SNP Detail

Summary

• ID
  rs581820822
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134341427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAA AAAAAAAAAA AAAAAGAAAA
  R
  AAAAGAAAAA GAAAAAGAAA GAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SWR/J
ss925325181	MGP_WTSI_5_134312573_mm38	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SWR/J
rs581820822					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss925325181	MGP_WTSI_5_134312573_mm38	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134341427 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16718	CpG island 16718			820 bp proximal
Gm71761	predicted gene, 71761			798 bp downstream
Gtf2i	general transcription factor II I			Intron
				mRNA-UTR
Rr399401	regulatory region 399401			893 bp upstream
Rr621987	regulatory region 621987			206 bp distal
Rr621988	regulatory region 621988			38 bp proximal
Rr621989	regulatory region 621989			1192 bp proximal
Tssr49086	transcription start site region 49086			1073 bp upstream
Tssr49087	transcription start site region 49087			1100 bp upstream
Tssr49088	transcription start site region 49088			1406 bp upstream
Tssr53628	transcription start site region 53628			24 bp upstream
Tssr53629	transcription start site region 53629			642 bp downstream
Tssr53630	transcription start site region 53630			1214 bp downstream
Tssr53631	transcription start site region 53631			1833 bp downstream
Tssr53632	transcription start site region 53632			1870 bp downstream
Tssr53633	transcription start site region 53633			1883 bp downstream
Tssr53634	transcription start site region 53634			1912 bp downstream
Tssr53635	transcription start site region 53635			1941 bp downstream
Tssr53636	transcription start site region 53636			1985 bp downstream