rs581590587 SNP Detail

Summary

• ID
  rs581590587
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119495381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTT TTTTTTTTGG TTTGTTTTTT
  T
  TTTGTTGTTT TTTTTTGTTT TTTTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SWR/J
ss915659810	MGP_WTSI_2_119664900	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SWR/J
rs581590587					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915659810	MGP_WTSI_2_119664900	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119495381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12124	CpG island 12124	1947 bp distal
Gm75025	predicted gene, 75025	204 bp downstream
Gm75032	predicted gene, 75032	193 bp upstream
H3f3c	H3 histone, family 3C	726 bp downstream
Rr397235	regulatory region 397235	1928 bp downstream
Rr563558	regulatory region 563558	1589 bp distal
Rr563559	regulatory region 563559	1032 bp proximal
Tssr25826	transcription start site region 25826	1250 bp downstream