rs581526978 SNP Detail

Summary

• ID
  rs581526978
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:55017663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT GTGTGTGTGT GTGTGTGTGT
  A
  TGTGTGAGTG TATGTGAGTA TGTGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	I/LnJ	KK/HlJ	LP/J	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	ST/bJ
ss916120997	MGP_WTSI_3_55110242	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	I/LnJ	KK/HlJ	LP/J	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	ST/bJ
rs581526978					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916120997	MGP_WTSI_3_55110242	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55017663 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13184	CpG island 13184	1673 bp proximal
Rr374991	regulatory region 374991	772 bp downstream
Rr576901	regulatory region 576901	314 bp proximal
Rr576902	regulatory region 576902	1376 bp proximal
Rr576903	regulatory region 576903	1765 bp proximal
Spart	spartin	1866 bp upstream
Tssr29147	transcription start site region 29147	1838 bp upstream