rs581270747 SNP Detail

Summary

• ID
  rs581270747
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156366311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC TCCTCCTCCT CCTCCTCCTC
  Y
  TCCTCCTCCT CCTCCTCCTC CTCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	ZALENDE/EiJ
ss915080169	MGP_WTSI_1_156538741	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	ZALENDE/EiJ
rs581270747					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915080169	MGP_WTSI_1_156538741	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156366311 () rs orientation: forward

Symbol	Name	Function Class
Rr421192	regulatory region 421192	148 bp distal
Rr421193	regulatory region 421193	1252 bp proximal
Rr421194	regulatory region 421194	1502 bp proximal