rs581170580 SNP Detail

Summary

• ID
  rs581170580
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31512063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTG GAGAGAGAGA GAGGGGGGGG
  C
  GGGGGAGGGA GGGAGGGAGA AAGGG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	LG/J	NOD/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ
ss916013489	MGP_WTSI_3_31457914	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	LG/J	NOD/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ
rs581170580					SNP	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916013489	MGP_WTSI_3_31457914	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31512063 () rs orientation: forward

Symbol	Name	Function Class
Rr574911	regulatory region 574911	99 bp proximal
Rr574912	regulatory region 574912	1643 bp proximal
Rr574913	regulatory region 574913	1750 bp proximal