rs581036327 SNP Detail

Summary

• ID
  rs581036327
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148718375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA GAGGGAGGGG GAGAGGGAGA
  G
  GGAGGGAGAG AGGGAGAGGG AGAGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J
ss915744238	MGP_WTSI_2_148876455	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J
rs581036327					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915744238	MGP_WTSI_2_148876455	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148718375 () rs orientation: forward

Symbol	Name	Function Class
Cst3	cystatin C	943 bp upstream
Rr374041	regulatory region 374041	248 bp downstream
Rr566976	regulatory region 566976	902 bp distal
Rr566977	regulatory region 566977	389 bp distal
Rr566978	regulatory region 566978	624 bp proximal
Tssr20682	transcription start site region 20682	1284 bp downstream
Tssr20683	transcription start site region 20683	1199 bp downstream
Tssr26688	transcription start site region 26688	1011 bp upstream
Tssr26689	transcription start site region 26689	967 bp upstream
Tssr26690	transcription start site region 26690	839 bp upstream
Tssr26691	transcription start site region 26691	814 bp upstream