rs580962984 SNP Detail

Summary

• ID
  rs580962984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85821501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAA ATAACTTCTG CAAGATTTCA
  Y
  AATTGAGAAA ACCCCTGAGT CGATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	SEA/GnJ	ZALENDE/EiJ
ss918200345	MGP_WTSI_6_85844519	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	SEA/GnJ	ZALENDE/EiJ
rs580962984					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918200345	MGP_WTSI_6_85844519	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85821501 () rs orientation: forward

Symbol	Name	Function Class
Gm67358	predicted gene, 67358	1368 bp downstream
Gm68507	predicted gene, 68507	within coordinates
Ptges3-ps	prostaglandin E synthase 3, pseudogene	60 bp downstream
Rr633275	regulatory region 633275	717 bp distal