rs580699853 SNP Detail

Summary

• ID
  rs580699853
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:167031981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAC CTCGGGCTCC GGCTCGGCTC
  G
  GCGGCGGCCG CGGCTGCCTG CGCGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss915809124	MGP_WTSI_2_167190061	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs580699853					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915809124	MGP_WTSI_2_167190061	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167031981 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1110018N20Rik	RIKEN cDNA 1110018N20 gene			within coordinates
Cpgi12734	CpG island 12734			within coordinates
Kcnb1	potassium voltage gated channel, Shab-related subfamily, member 1			mRNA-UTR
				Noncoding-Transcript-Variant
Ptgis	prostaglandin I2 (prostacyclin) synthase			1744 bp downstream
Rr570485	regulatory region 570485			1846 bp distal
Rr570486	regulatory region 570486			1349 bp distal
Rr570487	regulatory region 570487			426 bp distal
Rr570488	regulatory region 570488			within coordinates
Rr570489	regulatory region 570489			84 bp proximal
Rr570490	regulatory region 570490			392 bp proximal
Tssr21792	transcription start site region 21792			385 bp downstream
Tssr21793	transcription start site region 21793			368 bp downstream
Tssr27748	transcription start site region 27748			1424 bp upstream
Tssr27749	transcription start site region 27749			1288 bp upstream
Tssr27750	transcription start site region 27750			1246 bp upstream
Tssr27751	transcription start site region 27751			1225 bp upstream
Tssr27752	transcription start site region 27752			26 bp downstream
Tssr27753	transcription start site region 27753			63 bp downstream
Tssr27754	transcription start site region 27754			226 bp downstream