rs580688059 SNP Detail

Summary

• ID
  rs580688059
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82937441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA TTTATTTGTT TTTAGATTTT
  W
  GAAGTAAATC AGACTGCAGC TATTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss916244858	MGP_WTSI_3_83030134	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs580688059					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916244858	MGP_WTSI_3_83030134	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82937441 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Intron
Rr375250	regulatory region 375250	within coordinates
Tssr917	transcription start site region 917	1564 bp upstream
Tssr29661	transcription start site region 29661	1586 bp downstream
Tssr29662	transcription start site region 29662	1537 bp downstream
Tssr29663	transcription start site region 29663	1520 bp downstream
Tssr29664	transcription start site region 29664	1037 bp downstream
Tssr29665	transcription start site region 29665	998 bp downstream
Tssr29666	transcription start site region 29666	962 bp downstream
Tssr29667	transcription start site region 29667	919 bp downstream
Tssr29668	transcription start site region 29668	64 bp upstream
Tssr29669	transcription start site region 29669	108 bp upstream
Tssr29670	transcription start site region 29670	152 bp upstream
Tssr29671	transcription start site region 29671	696 bp upstream
Tssr29672	transcription start site region 29672	799 bp upstream
Tssr29673	transcription start site region 29673	827 bp upstream
Tssr29674	transcription start site region 29674	876 bp upstream
Tssr29675	transcription start site region 29675	886 bp upstream
Tssr29676	transcription start site region 29676	896 bp upstream
Tssr29677	transcription start site region 29677	913 bp upstream
Tssr29678	transcription start site region 29678	992 bp upstream
Tssr29679	transcription start site region 29679	1036 bp upstream
Tssr29680	transcription start site region 29680	1059 bp upstream
Tssr29681	transcription start site region 29681	1161 bp upstream
Tssr29682	transcription start site region 29682	1184 bp upstream
Tssr29683	transcription start site region 29683	1227 bp upstream
Tssr29684	transcription start site region 29684	1252 bp upstream
Tssr29685	transcription start site region 29685	1293 bp upstream
Tssr29686	transcription start site region 29686	1359 bp upstream
Tssr29687	transcription start site region 29687	1457 bp upstream
Tssr29688	transcription start site region 29688	1481 bp upstream
Tssr29689	transcription start site region 29689	1507 bp upstream
Tssr29690	transcription start site region 29690	1537 bp upstream
Tssr29691	transcription start site region 29691	1583 bp upstream
Tssr29692	transcription start site region 29692	1599 bp upstream
Tssr29693	transcription start site region 29693	1630 bp upstream
Tssr29694	transcription start site region 29694	1663 bp upstream
Tssr29695	transcription start site region 29695	1689 bp upstream
Tssr29696	transcription start site region 29696	1702 bp upstream
Tssr29697	transcription start site region 29697	1726 bp upstream
Tssr29698	transcription start site region 29698	1863 bp upstream
Tssr29699	transcription start site region 29699	1945 bp upstream
Tssr29700	transcription start site region 29700	1958 bp upstream
Tssr29701	transcription start site region 29701	1990 bp upstream
Tssr33800	transcription start site region 33800	968 bp downstream
Tssr33801	transcription start site region 33801	1313 bp downstream
Tssr33802	transcription start site region 33802	1449 bp downstream