rs580615491 SNP Detail

Summary

• ID
  rs580615491
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50397114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAG TTAGGTTTTT TTTGTTTTTT
  G
  TTTTTTTGTT TTTTGTTTTT TTTTT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	NZO/HlLtJ	NZW/LacJ	SEA/GnJ
ss925285859	MGP_WTSI_3_50442665_mm38	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	NZO/HlLtJ	NZW/LacJ	SEA/GnJ
rs580615491					SNP	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss925285859	MGP_WTSI_3_50442665_mm38	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50397114 () rs orientation: forward

Symbol	Name	Function Class
Rr367428	regulatory region 367428	39 bp downstream
Rr576159	regulatory region 576159	936 bp proximal
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	Intron
Tssr873	transcription start site region 873	847 bp upstream
Tssr29027	transcription start site region 29027	1082 bp upstream
Tssr33166	transcription start site region 33166	375 bp upstream
Tssr33167	transcription start site region 33167	47 bp downstream
Tssr33168	transcription start site region 33168	751 bp downstream
Tssr33169	transcription start site region 33169	791 bp downstream
Tssr33170	transcription start site region 33170	818 bp downstream
Tssr33171	transcription start site region 33171	847 bp downstream
Tssr33172	transcription start site region 33172	874 bp downstream
Tssr33173	transcription start site region 33173	913 bp downstream
Tssr33174	transcription start site region 33174	938 bp downstream
Tssr33175	transcription start site region 33175	1113 bp downstream