rs580606262 SNP Detail

Summary

• ID
  rs580606262
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138453603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACGC ACACACGCAC ACACACGCGC
  R
  CGCGCACACA CACACATACA CACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi5/Ianm	RF/J	SEA/GnJ	SM/J
ss917106064	MGP_WTSI_4_138726292	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi5/Ianm	RF/J	SEA/GnJ	SM/J
rs580606262					SNP	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917106064	MGP_WTSI_4_138726292	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138453603 () rs orientation: forward

Symbol	Name	Function Class
Pla2g2c	phospholipase A2, group IIC	Intron
Rr602998	regulatory region 602998	1948 bp distal
Rr602999	regulatory region 602999	1490 bp distal
Rr603000	regulatory region 603000	957 bp distal
Rr603001	regulatory region 603001	705 bp distal
Rr603002	regulatory region 603002	5 bp distal
Tssr39875	transcription start site region 39875	983 bp downstream
Tssr44173	transcription start site region 44173	1034 bp upstream
Tssr44174	transcription start site region 44174	1025 bp upstream
Ubxn10	UBX domain protein 10	Intron