rs580562536 SNP Detail

Summary

• ID
  rs580562536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:147215291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTT TCTTTCTGTC TTTCTTTCTT
  Y
  CTTTTTTTCT TTCTTTCTTT CTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BR/cdJ	C57L/J	C58/J	MOLF/EiJ	NZO/HlLtJ	QSi3/Ianm	ZALENDE/EiJ
ss917137193	MGP_WTSI_4_147130834	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	C	T	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BR/cdJ	C57L/J	C58/J	MOLF/EiJ	NZO/HlLtJ	QSi3/Ianm	ZALENDE/EiJ
rs580562536					SNP	C	T	C	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917137193	MGP_WTSI_4_147130834	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147215291 () rs orientation: forward

Symbol	Name	Function Class
Rr398763	regulatory region 398763	1057 bp upstream
Rr604468	regulatory region 604468	761 bp proximal
Rr604469	regulatory region 604469	1156 bp proximal
Rr604470	regulatory region 604470	1215 bp proximal
Zfp991	zinc finger protein 991	Intron