rs580528944 SNP Detail

Summary

• ID
  rs580528944
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189858693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC TCCCTCCCTC CCTCCCTCTC
  T
  CTCTTCCTCC CTCCCTCCCT CCCTC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	MA/MyJ	PWK/PhJ	SWR/J	ZALENDE/EiJ
ss915198772	MGP_WTSI_1_190126496	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	MA/MyJ	PWK/PhJ	SWR/J	ZALENDE/EiJ
rs580528944					SNP	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915198772	MGP_WTSI_1_190126496	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189858693 () rs orientation: forward

Symbol	Name	Function Class
Gm69899	predicted gene, 69899	within coordinates
Prox1	prospero homeobox 1	Intron
Rr425914	regulatory region 425914	1130 bp distal
Rr425915	regulatory region 425915	829 bp distal
Rr425916	regulatory region 425916	781 bp proximal