rs580435840 SNP Detail

Summary

• ID
  rs580435840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78873905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG ATAAATTCTT GTTGTAAATG
  Y
  AACCTTAGGC GGTTTGAAGG GGTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	MOLF/EiJ	ZALENDE/EiJ
ss916227809	MGP_WTSI_3_78966598	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	MOLF/EiJ	ZALENDE/EiJ
rs580435840					SNP	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916227809	MGP_WTSI_3_78966598	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78873905 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13272	CpG island 13272	202 bp proximal
Gm9762	predicted pseudogene 9762	within coordinates
Gm65474	predicted gene, 65474	within coordinates
Gm66687	predicted gene, 66687	within coordinates
Rr578452	regulatory region 578452	1776 bp distal
Rr578453	regulatory region 578453	45 bp proximal
Rr578454	regulatory region 578454	220 bp proximal