rs580296808 SNP Detail

Summary

• ID
  rs580296808
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59243144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC ACACACACAC ATACTCTCTC
  W
  CACACACACA CACACACACA CACAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss916795705	MGP_WTSI_4_59243144	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	A	T	A	T	A	A	A	A	T	A	T	A	T	T	A	A	T	T	T	A	A	T	T	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs580296808					SNP	T	T	A	T	A	T	A	A	A	A	T	A	T	A	T	T	A	A	T	T	T	A	A	T	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916795705	MGP_WTSI_4_59243144	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59243144 () rs orientation: forward

Symbol	Name	Function Class
Gm68412	predicted gene, 68412	481 bp downstream
Rr593011	regulatory region 593011	1822 bp distal
Rr593012	regulatory region 593012	139 bp distal
Rr593013	regulatory region 593013	1363 bp proximal
Rr593014	regulatory region 593014	1761 bp proximal