rs580222330 SNP Detail

Summary

• ID
  rs580222330
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:167031717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG CCCCGGGGTG GGCCCGCGCC
  A
  CCCCCCTACC CCGCCACACT CACCC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CE/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SWR/J
ss915809121	MGP_WTSI_2_167189797	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CE/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SWR/J
rs580222330					SNP	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915809121	MGP_WTSI_2_167189797	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167031717 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1110018N20Rik	RIKEN cDNA 1110018N20 gene			within coordinates
Kcnb1	potassium voltage gated channel, Shab-related subfamily, member 1			Intron
				Noncoding-Transcript-Variant
Rr570485	regulatory region 570485			1582 bp distal
Rr570486	regulatory region 570486			1085 bp distal
Rr570487	regulatory region 570487			162 bp distal
Rr570488	regulatory region 570488			within coordinates
Rr570489	regulatory region 570489			348 bp proximal
Rr570490	regulatory region 570490			656 bp proximal
Tssr21792	transcription start site region 21792			121 bp downstream
Tssr21793	transcription start site region 21793			104 bp downstream
Tssr27748	transcription start site region 27748			1160 bp upstream
Tssr27749	transcription start site region 27749			1024 bp upstream
Tssr27750	transcription start site region 27750			982 bp upstream
Tssr27751	transcription start site region 27751			961 bp upstream
Tssr27752	transcription start site region 27752			290 bp downstream
Tssr27753	transcription start site region 27753			327 bp downstream
Tssr27754	transcription start site region 27754			490 bp downstream