rs580065404 SNP Detail

Summary

• ID
  rs580065404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7558302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TCCTCCCTCC CTCCCTCCCT
  Y
  CCTCCCTCCC TCCCTCCCTT CCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C57L/J	CZECHII/EiJ	DBA/1J	FVB/NJ	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	RIIIS/J	ST/bJ	WSB/EiJ
ss915884286	MGP_WTSI_3_7493242	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	T	C	T	T	T	C	T	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C57L/J	CZECHII/EiJ	DBA/1J	FVB/NJ	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	RIIIS/J	ST/bJ	WSB/EiJ
rs580065404					SNP	C	C	C	C	C	C	C	T	C	T	T	T	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915884286	MGP_WTSI_3_7493242	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7558302 () rs orientation: forward

Symbol	Name	Function Class
Gm66025	predicted gene, 66025	within coordinates
Rr573246	regulatory region 573246	569 bp distal