rs579808339 SNP Detail

Summary

• ID
  rs579808339
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148246402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGCT GTCTGTCTGT CTGTCTGTCT
  S
  TCTGTCTGTC TGTCTGTCTG TCTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	QSi3/Ianm	RIIIS/J	SPRET/EiJ
ss917140605	MGP_WTSI_4_148161945	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	QSi3/Ianm	RIIIS/J	SPRET/EiJ
rs579808339					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917140605	MGP_WTSI_4_148161945	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148246402 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15295	CpG island 15295			901 bp distal
Fbxo2	F-box protein 2			Intron
				Noncoding-Transcript-Variant
Fbxo44	F-box protein 44			1739 bp upstream
Rr398857	regulatory region 398857			1616 bp downstream
Rr604608	regulatory region 604608			1314 bp distal
Rr604609	regulatory region 604609			184 bp distal
Tssr40263	transcription start site region 40263			1749 bp downstream
Tssr40264	transcription start site region 40264			1315 bp downstream
Tssr40265	transcription start site region 40265			1293 bp downstream
Tssr40266	transcription start site region 40266			1265 bp downstream
Tssr44600	transcription start site region 44600			1873 bp upstream