rs579797485 SNP Detail

Summary

• ID
  rs579797485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134000575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTC CCTCCCCTCC CCTCCCCTCC
  Y
  CTCCCCTCCC CTCCCCTCCC CTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	I/LnJ	KK/HlJ	NZO/HlLtJ	RF/J
ss917090512	MGP_WTSI_4_134273264	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	I/LnJ	KK/HlJ	NZO/HlLtJ	RF/J
rs579797485					SNP	C	C	T	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917090512	MGP_WTSI_4_134273264	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134000575 () rs orientation: forward

Symbol	Name	Function Class
Gm69734	predicted gene, 69734	365 bp upstream
Pdik1l	PDLIM1 interacting kinase 1 like	1738 bp downstream
Rr398573	regulatory region 398573	96 bp upstream
Rr601619	regulatory region 601619	within coordinates
Rr601620	regulatory region 601620	194 bp proximal
Rr601621	regulatory region 601621	376 bp proximal
Rr601622	regulatory region 601622	386 bp proximal