rs579473259 SNP Detail

Summary

• ID
  rs579473259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134343521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGTG CAGGGAAGCG GGGGGGCCGC
  Y
  GGTGCCCCCT TTTCTCTGCT CTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss917716785	MGP_WTSI_5_134314667	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs579473259					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917716785	MGP_WTSI_5_134314667	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134343521 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16718	CpG island 16718	within coordinates
Gm71534	predicted gene, 71534	135 bp upstream
Gm71761	predicted gene, 71761	892 bp upstream
Gtf2i	general transcription factor II I	mRNA-UTR
Rr378666	regulatory region 378666	102 bp upstream
Rr399401	regulatory region 399401	900 bp downstream
Rr621988	regulatory region 621988	903 bp distal
Rr621989	regulatory region 621989	402 bp distal
Rr621990	regulatory region 621990	5 bp proximal
Rr621991	regulatory region 621991	146 bp proximal
Rr621992	regulatory region 621992	1056 bp proximal
Tssr1657	transcription start site region 1657	289 bp downstream
Tssr49086	transcription start site region 49086	1003 bp downstream
Tssr49087	transcription start site region 49087	971 bp downstream
Tssr49088	transcription start site region 49088	676 bp downstream
Tssr49089	transcription start site region 49089	279 bp upstream
Tssr53629	transcription start site region 53629	1448 bp upstream
Tssr53630	transcription start site region 53630	847 bp upstream
Tssr53631	transcription start site region 53631	243 bp upstream
Tssr53632	transcription start site region 53632	215 bp upstream
Tssr53633	transcription start site region 53633	194 bp upstream
Tssr53634	transcription start site region 53634	168 bp upstream
Tssr53635	transcription start site region 53635	119 bp upstream
Tssr53636	transcription start site region 53636	96 bp upstream
Tssr53637	transcription start site region 53637	within coordinates
Tssr53638	transcription start site region 53638	11 bp downstream