rs579458589 SNP Detail

Summary

• ID
  rs579458589
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107781293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGG GGGGTGGGGG TGGGGTGGGG
  T
  GGGGGGGGGA TAGGGAACTT TCGGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	RIIIS/J
ss916978570	MGP_WTSI_4_107924096	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	RIIIS/J
rs579458589					SNP	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916978570	MGP_WTSI_4_107924096	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107781293 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14548	CpG island 14548	324 bp distal
Cpt2	carnitine palmitoyltransferase 2	507 bp upstream
Rr597091	regulatory region 597091	1643 bp distal
Rr597092	regulatory region 597092	within coordinates
Rr597093	regulatory region 597093	473 bp distal
Tssr42698	transcription start site region 42698	601 bp upstream
Tssr42699	transcription start site region 42699	579 bp upstream
Tssr42700	transcription start site region 42700	481 bp upstream