rs579414195 SNP Detail

Summary

• ID
  rs579414195
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145189589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCT CTGAACCTGT TAGCCATCCC
  Y
  ATTGAAATGC TCTTTTGTCC TTATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	FVB/NJ	I/LnJ	LEWES/EiJ	SPRET/EiJ	WSB/EiJ
ss917132000	MGP_WTSI_4_145463019	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	FVB/NJ	I/LnJ	LEWES/EiJ	SPRET/EiJ	WSB/EiJ
rs579414195					SNP	T	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917132000	MGP_WTSI_4_145463019	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145189589 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15270	CpG island 15270	604 bp proximal
Gm65281	predicted gene, 65281	1185 bp upstream
Rr377358	regulatory region 377358	48 bp upstream
Rr604377	regulatory region 604377	695 bp proximal
Rr604378	regulatory region 604378	1196 bp proximal
Smarca5-ps	SNF2 related chromatin remodeling ATPase 5, pseudogene	1279 bp upstream