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rs579413990 SNP Detail
Summary
  • ID
    rs579413990
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:82937963 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TCCAA ATAGTTTGGA TCCTCCACAC
Y
TCCTTGTCCC TCCACAGCTT CCTTT                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss916244860 MGP_WTSI_3_83030656 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs579413990 SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss916244860 MGP_WTSI_3_83030656 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:82937963 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Fga fibrinogen alpha chain Intron
Rr375250 regulatory region 375250 within coordinates
Tssr917 transcription start site region 917 1042 bp upstream
Tssr29664 transcription start site region 29664 1559 bp downstream
Tssr29665 transcription start site region 29665 1520 bp downstream
Tssr29666 transcription start site region 29666 1484 bp downstream
Tssr29667 transcription start site region 29667 1441 bp downstream
Tssr29668 transcription start site region 29668 447 bp downstream
Tssr29669 transcription start site region 29669 397 bp downstream
Tssr29670 transcription start site region 29670 360 bp downstream
Tssr29671 transcription start site region 29671 174 bp upstream
Tssr29672 transcription start site region 29672 277 bp upstream
Tssr29673 transcription start site region 29673 305 bp upstream
Tssr29674 transcription start site region 29674 354 bp upstream
Tssr29675 transcription start site region 29675 364 bp upstream
Tssr29676 transcription start site region 29676 374 bp upstream
Tssr29677 transcription start site region 29677 391 bp upstream
Tssr29678 transcription start site region 29678 470 bp upstream
Tssr29679 transcription start site region 29679 514 bp upstream
Tssr29680 transcription start site region 29680 537 bp upstream
Tssr29681 transcription start site region 29681 639 bp upstream
Tssr29682 transcription start site region 29682 662 bp upstream
Tssr29683 transcription start site region 29683 705 bp upstream
Tssr29684 transcription start site region 29684 730 bp upstream
Tssr29685 transcription start site region 29685 771 bp upstream
Tssr29686 transcription start site region 29686 837 bp upstream
Tssr29687 transcription start site region 29687 935 bp upstream
Tssr29688 transcription start site region 29688 959 bp upstream
Tssr29689 transcription start site region 29689 985 bp upstream
Tssr29690 transcription start site region 29690 1015 bp upstream
Tssr29691 transcription start site region 29691 1061 bp upstream
Tssr29692 transcription start site region 29692 1077 bp upstream
Tssr29693 transcription start site region 29693 1108 bp upstream
Tssr29694 transcription start site region 29694 1141 bp upstream
Tssr29695 transcription start site region 29695 1167 bp upstream
Tssr29696 transcription start site region 29696 1180 bp upstream
Tssr29697 transcription start site region 29697 1204 bp upstream
Tssr29698 transcription start site region 29698 1341 bp upstream
Tssr29699 transcription start site region 29699 1423 bp upstream
Tssr29700 transcription start site region 29700 1436 bp upstream
Tssr29701 transcription start site region 29701 1468 bp upstream
Tssr33800 transcription start site region 33800 446 bp downstream
Tssr33801 transcription start site region 33801 791 bp downstream
Tssr33802 transcription start site region 33802 927 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory