rs579362978 SNP Detail

Summary

• ID
  rs579362978
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:104516718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTA CAGAGACACT AGTGTTAAAG
  G
  ACCCAGGCCT TCCCTACAGA GACAC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	RF/J	SM/J	SPRET/EiJ
ss915606579	MGP_WTSI_2_104686373	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	RF/J	SM/J	SPRET/EiJ
rs579362978					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915606579	MGP_WTSI_2_104686373	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104516718 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12000	CpG island 12000	892 bp distal
Rr562107	regulatory region 562107	766 bp distal
Rr562108	regulatory region 562108	460 bp proximal
Rr562109	regulatory region 562109	972 bp proximal
Tcp11l1	t-complex 11 like 1	Intron