rs579314740 SNP Detail

Summary

• ID
  rs579314740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117149172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG CAGGGGTTCC CATCCTCGGG
  R
  GACTCAACAC TAACAACAGT ATAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss918312418	MGP_WTSI_6_117172211	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs579314740					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918312418	MGP_WTSI_6_117172211	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117149172 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637287	regulatory region 637287	1588 bp distal
Rr637288	regulatory region 637288	220 bp proximal
Rr637289	regulatory region 637289	1655 bp proximal
Rr637290	regulatory region 637290	1840 bp proximal
Rr637291	regulatory region 637291	1891 bp proximal
Tssr58392	transcription start site region 58392	724 bp downstream
Tssr58393	transcription start site region 58393	705 bp downstream
Tssr58394	transcription start site region 58394	665 bp downstream
Tssr58395	transcription start site region 58395	1281 bp upstream
Tssr58396	transcription start site region 58396	1297 bp upstream
Tssr58397	transcription start site region 58397	1335 bp upstream
Tssr58398	transcription start site region 58398	1361 bp upstream
Tssr58399	transcription start site region 58399	1383 bp upstream
Tssr58400	transcription start site region 58400	1411 bp upstream
Tssr58401	transcription start site region 58401	1447 bp upstream
Tssr58402	transcription start site region 58402	1478 bp upstream
Tssr58403	transcription start site region 58403	1496 bp upstream
Tssr58404	transcription start site region 58404	1515 bp upstream
Tssr58405	transcription start site region 58405	1557 bp upstream
Tssr58406	transcription start site region 58406	1587 bp upstream
Tssr58407	transcription start site region 58407	1618 bp upstream
Tssr58408	transcription start site region 58408	1685 bp upstream
Tssr58409	transcription start site region 58409	1707 bp upstream
Tssr58410	transcription start site region 58410	1729 bp upstream
Tssr58411	transcription start site region 58411	1745 bp upstream
Tssr58412	transcription start site region 58412	1772 bp upstream
Tssr58413	transcription start site region 58413	1785 bp upstream
Tssr58414	transcription start site region 58414	1818 bp upstream
Tssr58415	transcription start site region 58415	1833 bp upstream
Tssr58416	transcription start site region 58416	1848 bp upstream
Tssr58417	transcription start site region 58417	1902 bp upstream
Tssr58418	transcription start site region 58418	1935 bp upstream
Tssr58419	transcription start site region 58419	1954 bp upstream
Tssr58420	transcription start site region 58420	1981 bp upstream
Tssr58421	transcription start site region 58421	2000 bp upstream
Tssr62617	transcription start site region 62617	1345 bp downstream
Tssr62618	transcription start site region 62618	1367 bp downstream
Tssr62619	transcription start site region 62619	1403 bp downstream
Tssr62620	transcription start site region 62620	1446 bp downstream
Tssr62621	transcription start site region 62621	1512 bp downstream